IL.5

ARGONAUTE PROTEIN

PDB

The ligand-free form

2f8s_B [Alignment: 1]

The ligand-bound form

1yvu_A[Alignment: 1]

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Ligand

PDB*1

Full name

CA

CALCIUM ION

*1 Ligand name designated by the PDB identifiers.

Segments

Component No.

Fixed*1

Moving*1

Motion type

Ligand binding

Coupled motion type

1

D1(4A-261A,268A-361A,367A-425A,437A-706A)

L2(426A-436A)

Local

Independent

2

D1

L3(262A-267A)

Local

Independent

3

D1

L4(362A-366A)

Local

Independent

*1 The location of the fixed and moving segments indicated by the residue number assigned in the ligand-bound form. The background color of characters indicates the corresponding segment in the structure. The colored segments not described in the Table are: 1) a part of component in which the motion is small (< 1.0 A), or, 2) a part of a protomer of homodimers, for which a corresponding part of the other protomer is shown in the Table.

Displacement and disorder

Component No.

RMSD*1

Displacement*2

Disorder-order transition*3

Disorder residue*4

Helix-Coil*5

1

Yes

-10

2

Yes

-6

3

Yes

-5

*1 The root-mean-square displacement of a component of motion calculated for the domain motions.
*2 The mean displacement of a component of motion calculated for the local motions.
*3 Order-disorder transition: Whether the open form contains the disordered structure.
*4 The number of disordered residues.
*5 The number of residues exhibiting the alpha-helix to coil transition.

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