B.21

HYPOTHETICAL PROTEIN VIOE

PDB

The ligand-free form

2zf3_CD [Alignment: 1 2]

The ligand-bound form

2zf4_AB[Alignment: 1 2]

View

Animations of

the structural change


Using Jmol

Ligand

PDB*1

Full name

4xPPY

4x(3-PHENYLPYRUVIC ACID)

*1 Ligand name designated by the PDB identifiers.

Segments

Component No.

Fixed*1

Moving*1

Motion type

Ligand binding

Coupled motion type

1

Buried ligand

*1 The location of the fixed and moving segments indicated by the residue number assigned in the ligand-bound form. The background color of characters indicates the corresponding segment in the structure. The colored segments not described in the Table are: 1) a part of component in which the motion is small (< 1.0 A), or, 2) a part of a protomer of homodimers, for which a corresponding part of the other protomer is shown in the Table.

H-bond

Component No.

Ligand*1

Water*1

Protein*1

1

7

5

1

*1 The number of hydrogen-bonds observed in the proteins classified in "Buried Ligand".

Link ::.