B.95

RIBOSOME BIOGENESIS PROTEIN NEP1-LIKE

PDB

The ligand-free form

3bbe_AB [Alignment: 1 2]

The ligand-bound form

3bbh_AB[Alignment: 1 2]

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the structural change


Using Jmol

Ligand

PDB*1

Full name

2xSFG

2x(SINEFUNGIN)

*1 Ligand name designated by the PDB identifiers.

Segments

Component No.

Fixed*1

Moving*1

Motion type

Ligand binding

Coupled motion type

1

Buried ligand

*1 The location of the fixed and moving segments indicated by the residue number assigned in the ligand-bound form. The background color of characters indicates the corresponding segment in the structure. The colored segments not described in the Table are: 1) a part of component in which the motion is small (< 1.0 A), or, 2) a part of a protomer of homodimers, for which a corresponding part of the other protomer is shown in the Table.

H-bond

Component No.

Ligand*1

Water*1

Protein*1

1

13

7

2

*1 The number of hydrogen-bonds observed in the proteins classified in "Buried Ligand".

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