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IID00024
UniprotP13010
ProteinX-ray repair cross-complementing protein 5
GeneXRCC5
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
732
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-565 Hetero dimer : IID00023Complex
 Evidence X-RAY 1jey B Reference
       Region 1jey B 1-5 disorder
       Region 1jey B 6-170 order
       Region 1jey B 171-180 disorder
       Region 1jey B 181-545 order
       Region 1jey B 546-565 disorder
 Evidence X-RAY 1jeq B Reference
       Region 1jeq B 1-5 disorder
       Region 1jeq B 6-169 order
       Region 1jeq B 170-181 disorder
       Region 1jeq B 182-189 order
       Region 1jeq B 190-191 disorder
       Region 1jeq B 192-323 order
       Region 1jeq B 324-326 disorder
       Region 1jeq B 327-542 order
       Region 1jeq B 543-565 disorder
Seq 559-571 Hetero dimer : IID50009Complex
 Evidence X-RAY 3rz9 B Reference
       Region 3rz9 B 559-559 disorder
       Region 3rz9 B 560-571 order
Seq 566-710 Monomer :
 Evidence NMR 1rw2 A Reference
       Region 1rw2 A 566-710 order
       Region 1rw2 A 566-590 high_rmsd
       Region 1rw2 A 708-710 high_rmsd
 Evidence NMR 1q2z A Reference
       Region 1q2z A 590-709 order
       Region 1q2z A 590-591 high_rmsd
       Region 1q2z A 708-709 high_rmsd
Seqdisorder 566-594,705-732
 Evidence NMR This region is described to be disordered. (PubMed=15016365). Reference
       Region 566-594 disorder
       Region 705-732 disorder
Seqdisorder 543-591,709-732
 Evidence NMR This region is described to be disordered. (PubMed=14672664). Reference
       Region 543-591 disorder
       Region 709-732 disorder
SeqProS verified 560-571 Nuclear Localization Signal (NLS) Hetero dimer : IID50009Complex
       Region 3rz9 B 560-571 order
       Region 543-591 disorder
Seqphosphorylation
    715-715 Phosphothreonine; by PRKDC
    580-580 Phosphoserine; by PRKDC
    579-579 Phosphoserine; by PRKDC
    577-577 Phosphoserine; by PRKDC
    535-535 Phosphothreonine
    318-318 Phosphoserine
    258-258 Phosphoserine
    255-255 Phosphoserine
Seqacetylation
    665-665 N6-acetyllysine
    660-660 N6-acetyllysine
    332-332 N6-acetyllysine
    265-265 N6-acetyllysine
    144-144 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-3,175-182,547-581,694-732
Order 4-174,183-546,582-693
ProS 1-3,175-182,547-567,575-581,694-706,724-732
AlphaFold
Disorder 1-5,170-181,190-195,544-587,605-607,682-683,690-694,696-696,701-702,704-732
Order 6-169,182-189,196-543,588-604,608-681,684-689,695-695,697-700,703-703
Pfam Hmmer
PF03731 9-244 1e-96
PF02735 251-460 4.2e-64
PF03730 475-571 7.3e-42
SEG 366-376
Function
Function in SwissProt
Single-stranded DNA-dependent ATP-dependent helicase. Has a role in chromosome translocation. The DNA helicase II complex binds preferentially to fork-like ends of double-stranded DNA in a cell cycle-dependent manner. It works in the 3'-5' direction. Binding to DNA may be mediated by XRCC6. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair and V(D)J recombination. The XRCC5/6 dimer acts as regulatory subunit of the DNA-dependent protein kinase complex DNA-PK by increasing the affinity of the catalytic subunit PRKDC to DNA by 100-fold. The XRCC5/6 dimer is probably involved in stabilizing broken DNA ends and bringing them together (PubMed:12145306, PubMed:20383123, PubMed:7957065, PubMed:8621488). The assembly of the DNA-PK complex to DNA ends is required for the NHEJ ligation step. In association with NAA15, the XRCC5/6 dimer binds to the osteocalcin promoter and activates osteocalcin expression (PubMed:20383123). The XRCC5/6 dimer probably also acts as a 5'-deoxyribose-5-phosphate lyase (5'-dRP lyase), by catalyzing the beta-elimination of the 5' deoxyribose-5-phosphate at an abasic site near double-strand breaks. XRCC5 probably acts as the catalytic subunit of 5'-dRP activity, and allows to 'clean' the termini of abasic sites, a class of nucleotide damage commonly associated with strand breaks, before such broken ends can be joined. The XRCC5/6 dimer together with APEX1 acts as a negative regulator of transcription (PubMed:8621488). As part of the DNA-PK complex, involved in the early steps of ribosome assembly by promoting the processing of precursor rRNA into mature 18S rRNA in the small-subunit processome (PubMed:32103174). Binding to U3 small nucleolar RNA, recruits PRKDC and XRCC5/Ku86 to the small-subunit processome (PubMed:32103174). Plays a role in the regulation of DNA virus-mediated innate immune response by assembling into the HDP-RNP complex, a complex that serves as a platform for IRF3 phosphorylation and subsequent innate immune response activation through the cGAS-STING pathway.
Biological Process
See also
Diagram with PDB data
XRCC6/XRCC5/NHEJ1Complex of XLF and heterodimer Ku bound to DNA