Search Keyword:


Search option:


IID00075
UniprotQ14103
ProteinHeterogeneous nuclear ribonucleoprotein D0
GeneHNRNPD
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
355
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seqdisorder 70-97
 Evidence NMR Reference
       Region 70-97 disorder
Seq 71-75,96-96,98-175 Homo dimer :
 Evidence X-RAY 5im0 B Reference
       Region 5im0 B 96-96 order
       Region 5im0 B 98-175 order
 Evidence X-RAY 5im0 A Reference
       Region 5im0 A 71-75 disorder
       Region 5im0 A 98-173 order
       Region 5im0 A 174-175 disorder
Seq 98-172 Monomer :
 Evidence NMR 1hd1 A Reference
       Region 1hd1 A 98-172 order
       Region 1hd1 A 131-134 high_rmsd
 Evidence NMR 1hd0 A Reference
       Region 1hd0 A 98-172 order
Seq 181-259 Monomer :
 Evidence NMR 1x0f A Reference
       Region 1x0f A 181-259 order
 Evidence NMR 1wtb A Reference
       Region 1wtb A 181-259 order
 Evidence NMR 1iqt A Reference
       Region 1iqt A 183-257 order
       Region 1iqt A 216-223 high_rmsd
Seq 332-355 Hetero dimer : IID00094Complex
 Evidence X-RAY 2z5n B Reference
       Region 2z5n B 332-340 disorder
       Region 2z5n B 341-355 order
SeqProS possible 341-355 Nuclear Localization Signal (NLS) Hetero dimer : IID00094Complex
       Region 2z5n B 341-355 order
Seqphosphorylation
    71-71 Phosphoserine
    80-80 Phosphoserine
    82-82 Phosphoserine
    83-83 Phosphoserine
    91-91 Phosphothreonine
    127-127 Phosphothreonine
    190-190 Phosphoserine
    193-193 Phosphothreonine
    271-271 Phosphoserine
Seqacetylation
    292-292 N6-acetyllysine
    273-273 N6-acetyllysine
    251-251 N6-acetyllysine
    2-2 N-acetylserine
    165-165 N6-acetyllysine
    243-243 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-22,29-33,41-94,172-179,261-355
Order 23-28,34-40,95-171,180-260
ProS 18-22,29-33,41-83,172-179,279-355
AlphaFold
Disorder 1-93,174-181,220-220,222-222,259-355
Order 94-173,182-219,221-221,223-258
Pfam Hmmer
PF00076 99-169 3.6e-26
PF00076 184-254 4.4e-22
SEG 7-24 ,27-66 ,262-268 ,270-285 ,291-340
Function
Function in SwissProt
Binds with high affinity to RNA molecules that contain AU-rich elements (AREs) found within the 3'-UTR of many proto-oncogenes and cytokine mRNAs. Also binds to double- and single-stranded DNA sequences in a specific manner and functions a transcription factor. Each of the RNA-binding domains specifically can bind solely to a single-stranded non-monotonous 5'-UUAG-3' sequence and also weaker to the single-stranded 5'-TTAGGG-3' telomeric DNA repeat. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. Binding of RRM1 to DNA inhibits the formation of DNA quadruplex structure which may play a role in telomere elongation. May be involved in translationally coupled mRNA turnover. Implicated with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain. May play a role in the regulation of the rhythmic expression of circadian clock core genes. Directly binds to the 3'UTR of CRY1 mRNA and induces CRY1 rhythmic translation. May also be involved in the regulation of PER2 translation.