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IID00167
UniprotQ09161
ProteinNuclear cap-binding protein subunit 1
GeneNCBP1
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
790
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-790 Hetero trimer : IID00153Complex,IID00238Complex
 Evidence X-RAY 3fex A Reference
       Region 3fex A 1-1 disorder
       Region 3fex A 2-40 order
       Region 3fex A 41-43 disorder
       Region 3fex A 44-158 order
       Region 3fex A 159-160 disorder
       Region 3fex A 161-525 order
       Region 3fex A 526-538 disorder
       Region 3fex A 539-667 order
       Region 3fex A 668-682 disorder
       Region 3fex A 683-790 order
Seq 1-790 Hetero dimer : IID00238Complex
 Evidence X-RAY 5oob F Reference
       Region 5oob F 20-23 disorder
       Region 5oob F 24-484 order
       Region 5oob F 485-497 disorder
       Region 5oob F 498-525 order
       Region 5oob F 526-539 disorder
       Region 5oob F 540-665 order
       Region 5oob F 666-687 disorder
       Region 5oob F 688-790 order
 Evidence X-RAY 1n54 A Reference
       Region 1n54 A 1-23 disorder
       Region 1n54 A 24-526 order
       Region 1n54 A 527-538 disorder
       Region 1n54 A 539-665 order
       Region 1n54 A 666-687 disorder
       Region 1n54 A 688-790 order
 Evidence X-RAY 1n52 A Reference
       Region 1n52 A 1-25 disorder
       Region 1n52 A 26-526 order
       Region 1n52 A 527-538 disorder
       Region 1n52 A 539-665 order
       Region 1n52 A 666-686 disorder
       Region 1n52 A 687-790 order
 Evidence X-RAY 1h6k C Reference
       Region 1h6k C 20-25 disorder
       Region 1h6k C 26-527 order
       Region 1h6k C 528-537 disorder
       Region 1h6k C 538-665 order
       Region 1h6k C 666-670 disorder
       Region 1h6k C 685-687 disorder
       Region 1h6k C 688-790 order
 Evidence X-RAY 1h6k B Reference
       Region 1h6k B 20-25 disorder
       Region 1h6k B 26-526 order
       Region 1h6k B 527-538 disorder
       Region 1h6k B 539-664 order
       Region 1h6k B 665-670 disorder
       Region 1h6k B 685-688 disorder
       Region 1h6k B 689-790 order
 Evidence X-RAY 1h6k A Reference
       Region 1h6k A 20-26 disorder
       Region 1h6k A 27-526 order
       Region 1h6k A 527-538 disorder
       Region 1h6k A 539-665 order
       Region 1h6k A 666-670 disorder
       Region 1h6k A 685-689 disorder
       Region 1h6k A 690-790 order
 Evidence X-RAY 1h2v C Reference
       Region 1h2v C 20-28 disorder
       Region 1h2v C 29-526 order
       Region 1h2v C 527-538 disorder
       Region 1h2v C 539-663 order
       Region 1h2v C 664-691 disorder
       Region 1h2v C 692-790 order
Seq 1-790 Hetero trimer : IID00153Complex,IID00238Complex
 Evidence X-RAY 3fey A Reference
       Region 3fey A 1-1 disorder
       Region 3fey A 2-525 order
       Region 3fey A 526-538 disorder
       Region 3fey A 539-667 order
       Region 3fey A 668-682 disorder
       Region 3fey A 683-790 order
Seq 20-652,702-790 Hetero dimer : IID00238Complex
 Evidence X-RAY 1h2u A Reference
       Region 1h2u A 20-25 disorder
       Region 1h2u A 26-527 order
       Region 1h2u A 528-538 disorder
       Region 1h2u A 539-652 order
       Region 1h2u A 702-790 order
Seq 20-652,702-790 Hetero dimer : IID00238Complex
 Evidence X-RAY 1h2u B Reference
       Region 1h2u B 20-26 disorder
       Region 1h2u B 27-527 order
       Region 1h2u B 528-537 disorder
       Region 1h2u B 538-652 order
       Region 1h2u B 702-790 order
Seq 20-652,702-790 Hetero dimer : IID00238Complex
 Evidence X-RAY 1h2t C Reference
       Region 1h2t C 20-28 disorder
       Region 1h2t C 29-527 order
       Region 1h2t C 528-537 disorder
       Region 1h2t C 538-652 order
       Region 1h2t C 702-790 order
Seq 20-790 Hetero trimer : IID00238Complex,IID00734Complex
 Evidence X-RAY 5oo6 V Reference
       Region 5oo6 V 20-26 disorder
       Region 5oo6 V 27-486 order
       Region 5oo6 V 487-496 disorder
       Region 5oo6 V 497-527 order
       Region 5oo6 V 528-539 disorder
       Region 5oo6 V 540-670 order
       Region 5oo6 V 671-686 disorder
       Region 5oo6 V 687-790 order
 Evidence X-RAY 5oo6 S Reference
       Region 5oo6 S 20-26 disorder
       Region 5oo6 S 27-486 order
       Region 5oo6 S 487-496 disorder
       Region 5oo6 S 497-527 order
       Region 5oo6 S 528-539 disorder
       Region 5oo6 S 540-670 order
       Region 5oo6 S 671-686 disorder
       Region 5oo6 S 687-790 order
 Evidence X-RAY 5oo6 P Reference
       Region 5oo6 P 20-26 disorder
       Region 5oo6 P 27-486 order
       Region 5oo6 P 487-496 disorder
       Region 5oo6 P 497-527 order
       Region 5oo6 P 528-539 disorder
       Region 5oo6 P 540-670 order
       Region 5oo6 P 671-682 disorder
       Region 5oo6 P 683-790 order
 Evidence X-RAY 5oo6 M Reference
       Region 5oo6 M 20-26 disorder
       Region 5oo6 M 27-527 order
       Region 5oo6 M 528-539 disorder
       Region 5oo6 M 540-670 order
       Region 5oo6 M 671-682 disorder
       Region 5oo6 M 683-790 order
 Evidence X-RAY 5oo6 J Reference
       Region 5oo6 J 20-26 disorder
       Region 5oo6 J 27-486 order
       Region 5oo6 J 487-496 disorder
       Region 5oo6 J 497-527 order
       Region 5oo6 J 528-539 disorder
       Region 5oo6 J 540-670 order
       Region 5oo6 J 671-682 disorder
       Region 5oo6 J 683-790 order
 Evidence X-RAY 5oo6 G Reference
       Region 5oo6 G 20-26 disorder
       Region 5oo6 G 27-486 order
       Region 5oo6 G 487-496 disorder
       Region 5oo6 G 497-527 order
       Region 5oo6 G 528-539 disorder
       Region 5oo6 G 540-670 order
       Region 5oo6 G 671-682 disorder
       Region 5oo6 G 683-790 order
 Evidence X-RAY 5oo6 D Reference
       Region 5oo6 D 20-26 disorder
       Region 5oo6 D 27-527 order
       Region 5oo6 D 528-539 disorder
       Region 5oo6 D 540-670 order
       Region 5oo6 D 671-682 disorder
       Region 5oo6 D 683-790 order
 Evidence X-RAY 5oo6 A Reference
       Region 5oo6 A 20-26 disorder
       Region 5oo6 A 27-486 order
       Region 5oo6 A 487-496 disorder
       Region 5oo6 A 497-527 order
       Region 5oo6 A 528-539 disorder
       Region 5oo6 A 540-670 order
       Region 5oo6 A 671-686 disorder
       Region 5oo6 A 687-790 order
Seq 20-790 Hetero trimer : IID00030Complex,IID00238Complex
 Evidence X-RAY 5oob I Reference
       Region 5oob I 20-27 disorder
       Region 5oob I 28-526 order
       Region 5oob I 527-539 disorder
       Region 5oob I 540-665 order
       Region 5oob I 666-686 disorder
       Region 5oob I 687-790 order
 Evidence X-RAY 5oob C Reference
       Region 5oob C 20-22 disorder
       Region 5oob C 23-525 order
       Region 5oob C 526-538 disorder
       Region 5oob C 539-664 order
       Region 5oob C 665-688 disorder
       Region 5oob C 689-790 order
 Evidence X-RAY 5oob A Reference
       Region 5oob A 20-25 disorder
       Region 5oob A 26-526 order
       Region 5oob A 527-534 disorder
       Region 5oob A 535-668 order
       Region 5oob A 669-686 disorder
       Region 5oob A 687-790 order
SeqProS verified 2-25 Nuclear Localization Signal (NLS) Hetero trimer : IID00153Complex,IID00238Complex
       Region 3fex A 2-40 order
       Region 1n52 A 1-25 disorder
SeqProS verified 2-25 Nuclear Localization Signal (NLS) Hetero trimer : IID00153Complex,IID00238Complex
       Region 3fey A 2-525 order
       Region 1n52 A 1-25 disorder
Seqphosphorylation
    201-201 Phosphoserine
    22-22 Phosphoserine; by RPS6KB1
    21-21 Phosphothreonine; by RPS6KB1
    7-7 Phosphoserine; by RPS6KB1
Seqacetylation
    698-698 N6-acetyllysine
    204-204 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-23,680-693
Order 24-259,265-529,536-679,694-790
ProS 4-20,680-685
AlphaFold
Disorder 1-23,530-537,673-683
Order 24-529,538-672,684-790
Pfam Hmmer
PF02854 28-240 6.9e-54
SEG 530-534 ,657-667 ,671-685 ,747-760
Function
Function in SwissProt
Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense-mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus via its interaction with ALYREF/THOC4/ALY, leading to the recruitment of the mRNA export machinery to the 5'-end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U snRNA and intronless mRNAs export from the nucleus. The CBC complex is essential for a pioneer round of mRNA translation, before steady state translation when the CBC complex is replaced by cytoplasmic cap-binding protein eIF4E. The pioneer round of mRNA translation mediated by the CBC complex plays a central role in nonsense-mediated mRNA decay (NMD), NMD only taking place in mRNAs bound to the CBC complex, but not on eIF4E-bound mRNAs. The CBC complex enhances NMD in mRNAs containing at least one exon-junction complex (EJC) via its interaction with UPF1, promoting the interaction between UPF1 and UPF2. The CBC complex is also involved in 'failsafe' NMD, which is independent of the EJC complex, while it does not participate in Staufen-mediated mRNA decay (SMD). During cell proliferation, the CBC complex is also involved in microRNAs (miRNAs) biogenesis via its interaction with SRRT/ARS2 and is required for miRNA-mediated RNA interference. The CBC complex also acts as a negative regulator of PARN, thereby acting as an inhibitor of mRNA deadenylation. In the CBC complex, NCBP1/CBP80 does not bind directly capped RNAs (m7GpppG-capped RNA) but is required to stabilize the movement of the N-terminal loop of NCBP2/CBP20 and lock the CBC into a high affinity cap-binding state with the cap structure. Associates with NCBP3 to form an alternative cap-binding complex (CBC) which plays a key role in mRNA export and is particularly important in cellular stress situations such as virus infections. The conventional CBC with NCBP2 binds both small nuclear RNA (snRNA) and messenger (mRNA) and is involved in their export from the nucleus whereas the alternative CBC with NCBP3 does not bind snRNA and associates only with mRNA thereby playing a role only in mRNA export. NCBP1/CBP80 is required for cell growth and viability (PubMed:26382858).