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IID00251
UniprotQ9BZI7
ProteinRegulator of nonsense transcripts 3B
GeneUPF3B
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
483
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 50-140 Hetero tetramer : IID00252Complex
 Evidence X-RAY 1uw4 A Reference
       Region 1uw4 A 50-140 order
Seq 50-140 Hetero dimer : IID00252Complex
 Evidence X-RAY 1uw4 C Reference
       Region 1uw4 C 50-140 order
Seq 424-483 Hetero undecamer : IID00370Complex,IID00375Complex,Q9Y5S9
 Evidence X-RAY 2xb2 G Reference
       Region 2xb2 G 424-430 disorder
       Region 2xb2 G 431-445 order
       Region 2xb2 G 446-483 disorder
 Evidence X-RAY 2xb2 U Reference
       Region 2xb2 U 424-430 disorder
       Region 2xb2 U 431-446 order
       Region 2xb2 U 447-483 disorder
Seqphosphorylation
    169-169 Phosphothreonine
    198-198 Phosphothreonine
    310-310 Phosphoserine
 
Prediction
NeProc
Disorder 1-50,172-180,199-199,254-341,414-483
Order 51-171,181-198,200-253,342-413
ProS 199-199,280-311,329-341,414-423,429-457
AlphaFold
Disorder 1-49,140-147,170-177,211-211,215-227,229-229,231-231,233-234,250-271,277-344,401-436,438-439,443-483
Order 50-139,148-169,178-210,212-214,228-228,230-230,232-232,235-249,272-276,345-400,437-437,440-442
Pfam Hmmer
PF03467 44-211 4.8e-71
SEG 2-13 ,20-39 ,138-150 ,207-256 ,338-397 ,408-427
Function
Function in SwissProt
Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. Recruits UPF2 at the cytoplasmic side of the nuclear envelope and the subsequent formation of an UPF1-UPF2-UPF3 surveillance complex (including UPF1 bound to release factors at the stalled ribosome) is believed to activate NMD. In cooperation with UPF2 stimulates both ATPase and RNA helicase activities of UPF1. Binds spliced mRNA upstream of exon-exon junctions. In vitro, stimulates translation; the function is independent of association with UPF2 and components of the EJC core.