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IID00325
UniprotQ92900
ProteinRegulator of nonsense transcripts 1
GeneUPF1
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
1129
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 115-272 Monomer :
 Evidence X-RAY 2iyk B Reference
       Region 2iyk B 115-117 disorder
       Region 2iyk B 118-272 order
 Evidence X-RAY 2iyk A Reference
       Region 2iyk A 115-117 disorder
       Region 2iyk A 118-272 order
Seq 115-352,364-925 Hetero dimer : IID00252Complex
 Evidence X-RAY 2wjv B Reference
       Region 2wjv B 115-115 disorder
       Region 2wjv B 116-220 order
       Region 2wjv B 221-223 disorder
       Region 2wjv B 224-280 order
       Region 2wjv B 281-287 disorder
       Region 2wjv B 288-333 order
       Region 2wjv B 334-339 disorder
       Region 2wjv B 340-348 order
       Region 2wjv B 349-352 disorder
       Region 2wjv B 364-366 disorder
       Region 2wjv B 367-395 order
       Region 2wjv B 396-399 disorder
       Region 2wjv B 400-768 order
       Region 2wjv B 769-771 disorder
       Region 2wjv B 772-924 order
       Region 2wjv B 925-925 disorder
 Evidence X-RAY 2wjv A Reference
       Region 2wjv A 115-115 disorder
       Region 2wjv A 116-220 order
       Region 2wjv A 221-223 disorder
       Region 2wjv A 224-280 order
       Region 2wjv A 281-285 disorder
       Region 2wjv A 286-348 order
       Region 2wjv A 349-352 disorder
       Region 2wjv A 364-366 disorder
       Region 2wjv A 367-395 order
       Region 2wjv A 396-399 disorder
       Region 2wjv A 400-405 order
       Region 2wjv A 406-410 disorder
       Region 2wjv A 411-922 order
       Region 2wjv A 923-925 disorder
Seq 115-925 Monomer :
 Evidence X-RAY 2xzo A Reference
       Region 2xzo A 295-348 order
       Region 2xzo A 349-352 disorder
       Region 2xzo A 364-365 disorder
       Region 2xzo A 366-592 order
       Region 2xzo A 593-596 disorder
       Region 2xzo A 597-925 order
 Evidence X-RAY 2wjy A Reference
       Region 2wjy A 115-115 disorder
       Region 2wjy A 116-198 order
       Region 2wjy A 199-203 disorder
       Region 2wjy A 204-218 order
       Region 2wjy A 219-228 disorder
       Region 2wjy A 229-279 order
       Region 2wjy A 280-287 disorder
       Region 2wjy A 288-352 order
       Region 2wjy A 364-365 disorder
       Region 2wjy A 366-924 order
       Region 2wjy A 925-925 disorder
 Evidence X-RAY 2gk7 A Reference
       Region 2gk7 A 295-336 order
       Region 2gk7 A 337-338 disorder
       Region 2gk7 A 339-377 order
       Region 2gk7 A 378-384 disorder
       Region 2gk7 A 385-411 order
       Region 2gk7 A 412-416 disorder
       Region 2gk7 A 417-594 order
       Region 2gk7 A 595-598 disorder
       Region 2gk7 A 599-919 order
       Region 2gk7 A 920-925 disorder
 Evidence X-RAY 2gk6 B Reference
       Region 2gk6 B 295-348 order
       Region 2gk6 B 349-352 disorder
       Region 2gk6 B 364-366 disorder
       Region 2gk6 B 367-593 order
       Region 2gk6 B 594-597 disorder
       Region 2gk6 B 598-854 order
       Region 2gk6 B 855-860 disorder
       Region 2gk6 B 861-922 order
       Region 2gk6 B 923-925 disorder
 Evidence X-RAY 2gk6 A Reference
       Region 2gk6 A 295-348 order
       Region 2gk6 A 349-352 disorder
       Region 2gk6 A 364-366 disorder
       Region 2gk6 A 367-593 order
       Region 2gk6 A 594-597 disorder
       Region 2gk6 A 598-854 order
       Region 2gk6 A 855-860 disorder
       Region 2gk6 A 861-922 order
       Region 2gk6 A 923-925 disorder
 Evidence X-RAY 2gjk A Reference
       Region 2gjk A 295-594 order
       Region 2gjk A 595-598 disorder
       Region 2gjk A 599-919 order
       Region 2gjk A 920-925 disorder
 Evidence X-RAY 6ej5 A Reference
       Region 6ej5 A 295-347 order
       Region 6ej5 A 348-359 disorder
       Region 6ej5 A 360-398 order
       Region 6ej5 A 399-401 disorder
       Region 6ej5 A 402-561 order
       Region 6ej5 A 562-565 disorder
       Region 6ej5 A 566-594 order
       Region 6ej5 A 595-598 disorder
       Region 6ej5 A 599-743 order
       Region 6ej5 A 744-745 disorder
       Region 6ej5 A 746-819 order
       Region 6ej5 A 820-820 disorder
       Region 6ej5 A 821-858 order
       Region 6ej5 A 859-861 disorder
       Region 6ej5 A 862-921 order
       Region 6ej5 A 922-925 disorder
Seq 295-352,364-925 Homo trimer :
 Evidence X-RAY 2xzp A Reference
       Region 2xzp A 295-352 order
       Region 2xzp A 364-925 order
Seqphosphorylation
    10-10 Phosphoserine
    31-31 Phosphoserine
    565-565 Phosphoserine
    956-956 Phosphoserine
    1089-1089 Phosphoserine
    1107-1107 Phosphoserine
    1110-1110 Phosphoserine
    1127-1127 Phosphoserine
 
Prediction
NeProc
Disorder 1-11,42-115,589-606,940-1129
Order 12-41,116-588,607-939
ProS 1-8,42-46,84-93,101-108,589-606,943-960,967-1000,1079-1083,1088-1129
AlphaFold
Disorder 1-117,199-203,216-223,280-287,324-324,348-368,395-395,397-399,771-773,842-842,857-863,928-1129
Order 118-198,204-215,224-279,288-323,325-347,369-394,396-396,400-770,774-841,843-856,864-927
Pfam Hmmer
PF04851 479-615 3.7e-05
SEG 47-72 ,106-115 ,1000-1006 ,1018-1031 ,1071-1086
Function
Function in SwissProt
RNA-dependent helicase and ATPase required for nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. Recruited by release factors to stalled ribosomes together with the SMG1C protein kinase complex to form the transient SURF (SMG1-UPF1-eRF1-eRF3) complex. In EJC-dependent NMD, the SURF complex associates with the exon junction complex (EJC) (located 50-55 or more nucleotides downstream from the termination codon) through UPF2 and allows the formation of an UPF1-UPF2-UPF3 surveillance complex which is believed to activate NMD. Phosphorylated UPF1 is recognized by EST1B/SMG5, SMG6 and SMG7 which are thought to provide a link to the mRNA degradation machinery involving exonucleolytic and endonucleolytic pathways, and to serve as adapters to protein phosphatase 2A (PP2A), thereby triggering UPF1 dephosphorylation and allowing the recycling of NMD factors. UPF1 can also activate NMD without UPF2 or UPF3, and in the absence of the NMD-enhancing downstream EJC indicative for alternative NMD pathways. Plays a role in replication-dependent histone mRNA degradation at the end of phase S; the function is independent of UPF2. For the recognition of premature termination codons (PTC) and initiation of NMD a competitive interaction between UPF1 and PABPC1 with the ribosome-bound release factors is proposed. The ATPase activity of UPF1 is required for disassembly of mRNPs undergoing NMD. Essential for embryonic viability. Together with UPF2 and dependent on TDRD6, mediates the degradation of mRNA hardoring long 3'UTR by inducing the NMD machinery (By similarity).