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IID50235
UniprotQ9JIK5
ProteinNucleolar RNA helicase 2
GeneDdx21
OrganismMus musculus
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
851
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 839-851 Hetero trimer : IID50009Complex
 Evidence X-RAY 3zin B Reference
       Region 3zin B 839-850 order
       Region 3zin B 851-851 disorder
 Evidence X-RAY 3zin C Reference
       Region 3zin C 839-840 disorder
       Region 3zin C 841-846 order
       Region 3zin C 847-851 disorder
SeqProS possible 841-846 Nuclear Localization Signal (NLS) Hetero trimer : IID50009Complex
       Region 3zin B 839-850 order
       Region 3zin C 841-846 order
Seqphosphorylation
    243-243 Phosphoserine
    7-7 Phosphoserine
    639-639 Phosphoserine
    368-368 Phosphothreonine
    245-245 Phosphoserine
    244-244 Phosphoserine
    13-13 Phosphoserine
    236-236 Phosphoserine
    218-218 Phosphoserine
    192-192 Phosphoserine
    181-181 Phosphoserine
    155-155 Phosphoserine
    144-144 Phosphoserine
    118-118 Phosphoserine
Seqacetylation
    847-847 N6-acetyllysine
    672-672 N6-acetyllysine
    134-134 N6-acetyllysine
    39-39 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-255,787-851
Order 256-786
ProS 1-19,52-56,210-213,798-851
AlphaFold
Disorder 1-251,324-325,474-476,568-577,693-698,782-782,784-784,787-851
Order 252-323,326-473,477-567,578-692,699-781,783-783,785-786
Pfam Hmmer
PF00270 282-457 1.2e-61
PF00271 528-604 2.9e-31
PF08152 692-788 1.5e-53
SEG 24-45 ,87-98 ,107-139 ,162-171 ,199-208 ,596-607 ,682-688 ,827-843
Function
Function in SwissProt
RNA helicase that acts as a sensor of the transcriptional status of both RNA polymerase (Pol) I and II: promotes ribosomal RNA (rRNA) processing and transcription from polymerase II (Pol II) (By similarity). Binds various RNAs, such as rRNAs, snoRNAs, 7SK and, at lower extent, mRNAs (By similarity). In the nucleolus, localizes to rDNA locus, where it directly binds rRNAs and snoRNAs, and promotes rRNA transcription, processing and modification (By similarity). Required for rRNA 2'-O-methylation, possibly by promoting the recruitment of late-acting snoRNAs SNORD56 and SNORD58 with pre-ribosomal complexes (By similarity). In the nucleoplasm, binds 7SK RNA and is recruited to the promoters of Pol II-transcribed genes: acts by facilitating the release of P-TEFb from inhibitory 7SK snRNP in a manner that is dependent on its helicase activity, thereby promoting transcription of its target genes (By similarity). Functions as cofactor for JUN-activated transcription: required for phosphorylation of JUN at 'Ser-77' (By similarity). Can unwind double-stranded RNA (helicase) and can fold or introduce a secondary structure to a single-stranded RNA (foldase) (By similarity). Together with SIRT7, required to prevent R-loop-associated DNA damage and transcription-associated genomic instability: deacetylation by SIRT7 activates the helicase activity, thereby overcoming R-loop-mediated stalling of RNA polymerases (By similarity). Involved in rRNA processing. May bind to specific miRNA hairpins (By similarity). Component of a multi-helicase-TICAM1 complex that acts as a cytoplasmic sensor of viral double-stranded RNA (dsRNA) and plays a role in the activation of a cascade of antiviral responses including the induction of proinflammatory cytokines via the adapter molecule TICAM1 (PubMed:21703541).