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IID90024
UniprotQ38SQ2
ProteinNon-structural protein 1
GeneNS
OrganismInfluenza A virus (strain A/Hong Kong/5/1983 H3N2)
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
237
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 216-230 Hetero dimer : IID00003Complex
 Evidence X-RAY 4o42 B Reference
       Region 4o42 B 216-223 disorder
       Region 4o42 B 224-230 order
SeqProS possible 224-230 Same region of homolog (P03496, 74%identity) is disordered in the free state. Hetero dimer : IID00003Complex
       Region 4o42 B 224-230 order
 
Prediction
NeProc
Disorder 1-3,210-237
Order 4-209
ProS 210-237
AlphaFold
Disorder 1-1,73-85,204-215,218-218,222-237
Order 2-72,86-203,216-217,219-221
Pfam Hmmer
PF00600 1-217 1.5e-165
SEG 34-48
Function
Function in SwissProt
Prevents the establishment of the cellular antiviral state by inhibiting TRIM25-mediated DDX58 ubiquitination, which normally triggers the antiviral transduction signal that leads to the activation of type I IFN genes by transcription factors IRF3 and IRF7. Prevents human EIF2AK2/PKR activation, either by binding double-strand RNA, or by interacting directly with EIF2AK2/PKR. This function may be important at the very beginning of the infection, when NS1 is mainly present in the cytoplasm. Also binds poly(A) and U6 snRNA.
Inhibits post-transcriptional processing of cellular pre-mRNA, by binding and inhibiting two cellular proteins that are required for the 3'-end processing of cellular pre-mRNAs: the 30 kDa cleavage and polyadenylation specificity factor/CPSF4 and the poly(A)-binding protein 2/PABPN1. In turn, unprocessed 3' end pre-mRNAs accumulate in the host nucleus and are no longer exported to the cytoplasm. Cellular protein synthesis is thereby shut off very early after virus infection. Viral protein synthesis is not affected by the inhibition of the cellular 3' end processing machinery because the poly(A) tails of viral mRNAs are produced by the viral polymerase through a stuttering mechanism.