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IID00051
UniprotP49005
ProteinDNA polymerase delta subunit 2
GenePOLD2
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
469
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-469 Hetero dimer : IID00080Complex
 Evidence X-RAY 3e0j A Reference
       Region 3e0j A 1-41 order
       Region 3e0j A 42-53 disorder
       Region 3e0j A 54-101 order
       Region 3e0j A 102-123 disorder
       Region 3e0j A 124-250 order
       Region 3e0j A 251-263 disorder
       Region 3e0j A 264-381 order
       Region 3e0j A 382-387 disorder
       Region 3e0j A 388-465 order
       Region 3e0j A 466-469 disorder
 Evidence X-RAY 3e0j C Reference
       Region 3e0j C 1-41 order
       Region 3e0j C 42-52 disorder
       Region 3e0j C 53-101 order
       Region 3e0j C 102-123 disorder
       Region 3e0j C 124-250 order
       Region 3e0j C 251-263 disorder
       Region 3e0j C 264-381 order
       Region 3e0j C 382-388 disorder
       Region 3e0j C 389-458 order
       Region 3e0j C 459-469 disorder
 Evidence X-RAY 3e0j E Reference
       Region 3e0j E 1-41 order
       Region 3e0j E 42-53 disorder
       Region 3e0j E 54-101 order
       Region 3e0j E 102-123 disorder
       Region 3e0j E 124-250 order
       Region 3e0j E 251-263 disorder
       Region 3e0j E 264-381 order
       Region 3e0j E 382-388 disorder
       Region 3e0j E 389-458 order
       Region 3e0j E 459-469 disorder
 Evidence X-RAY 3e0j G Reference
       Region 3e0j G 1-41 order
       Region 3e0j G 42-53 disorder
       Region 3e0j G 54-101 order
       Region 3e0j G 102-123 disorder
       Region 3e0j G 124-250 order
       Region 3e0j G 251-263 disorder
       Region 3e0j G 264-381 order
       Region 3e0j G 382-388 disorder
       Region 3e0j G 389-458 order
       Region 3e0j G 459-469 disorder
Seqphosphorylation
    257-257 Phosphoserine
    15-15 Phosphoserine
Seqacetylation
    1-1 N-acetylmethionine
 
Prediction
NeProc
Disorder 1-22,457-469
Order 23-182,191-456
ProS 10-17,466-469
AlphaFold
Disorder 1-13,113-121,207-210,254-269,454-469
Order 14-112,122-206,211-253,270-453
Pfam Hmmer
PF04042 196-412 3.9e-92
SEG 197-218 ,459-468
Function
Function in SwissProt
Accessory component of both the DNA polymerase delta complex and the DNA polymerase zeta complex (PubMed:22801543, PubMed:17317665, PubMed:24449906). As a component of the trimeric and tetrameric DNA polymerase delta complexes (Pol-delta3 and Pol-delta4, respectively), plays a role in high fidelity genome replication, including in lagging strand synthesis, and repair (PubMed:12403614, PubMed:16510448, PubMed:19074196, PubMed:20334433, PubMed:24035200). Pol-delta3 and Pol-delta4 are characterized by the absence or the presence of POLD4. They exhibit differences in catalytic activity. Most notably, Pol-delta3 shows higher proofreading activity than Pol-delta4 (PubMed:19074196, PubMed:20334433). Although both Pol-delta3 and Pol-delta4 process Okazaki fragments in vitro, Pol-delta3 may also be better suited to fulfill this task, exhibiting near-absence of strand displacement activity compared to Pol-delta4 and stalling on encounter with the 5'-blocking oligonucleotides. Pol-delta3 idling process may avoid the formation of a gap, while maintaining a nick that can be readily ligated (PubMed:24035200). Along with DNA polymerase kappa, DNA polymerase delta carries out approximately half of nucleotide excision repair (NER) synthesis following UV irradiation (PubMed:20227374). Under conditions of DNA replication stress, required for the repair of broken replication forks through break-induced replication (BIR) (PubMed:24310611). Involved in the translesion synthesis (TLS) of templates carrying O6-methylguanine or abasic sites performed by Pol-delta4, independently of DNA polymerase zeta (REV3L) or eta (POLH). Facilitates abasic site bypass by DNA polymerase delta by promoting extension from the nucleotide inserted opposite the lesion. Also involved in TLS as a component of the DNA polymerase zeta complex (PubMed:24449906). Along with POLD3, dramatically increases the efficiency and processivity of DNA synthesis of the DNA polymerase zeta complex compared to the minimal zeta complex, consisting of only REV3L and REV7 (PubMed:24449906).
Biological Process
See also
Diagram with PDB data
XPA/ERCC1Solution structure of a ERCC1-XPA heterodimer