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IID00080
UniprotQ15054
ProteinDNA polymerase delta subunit 3
GenePOLD3
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
466
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-144 Hetero dimer : IID00051Complex
 Evidence X-RAY 3e0j B Reference
       Region 3e0j B 1-1 disorder
       Region 3e0j B 2-144 order
 Evidence X-RAY 3e0j D Reference
       Region 3e0j D 1-1 disorder
       Region 3e0j D 2-144 order
 Evidence X-RAY 3e0j F Reference
       Region 3e0j F 1-1 disorder
       Region 3e0j F 2-144 order
 Evidence X-RAY 3e0j H Reference
       Region 3e0j H 1-1 disorder
       Region 3e0j H 2-144 order
Seq 231-246 Hetero dimer : IID00284Complex
 Evidence NMR 2n1g B Reference
       Region 2n1g B 231-246 order
Seq 452-466 Hetero hexamer : IID00022Complex
 Evidence X-RAY 1u76 F Reference
       Region 1u76 F 452-452 disorder
       Region 1u76 F 453-465 order
       Region 1u76 F 466-466 disorder
 Evidence X-RAY 1u76 D Reference
       Region 1u76 D 452-452 disorder
       Region 1u76 D 453-465 order
       Region 1u76 D 466-466 disorder
 Evidence X-RAY 1u76 B Reference
       Region 1u76 B 452-452 disorder
       Region 1u76 B 453-464 order
       Region 1u76 B 465-466 disorder
SeqProS possible 453-465 PIP box motif Hetero hexamer : IID00022Complex
       Region 1u76 D 453-465 order
       Region 1u76 F 453-465 order
       Region 1u76 B 453-464 order
Seqphosphorylation
    458-458 Phosphoserine
    277-277 Phosphothreonine
    307-307 Phosphoserine
    407-407 Phosphoserine
    409-409 Phosphoserine
    411-411 Phosphothreonine
    413-413 Phosphoserine
Seqacetylation
    2-2 N-acetylalanine
 
Prediction
NeProc
Disorder 1-3,142-466
Order 4-141
ProS 142-149,295-299,385-410,456-466
AlphaFold
Disorder 1-1,147-350,354-382,410-458,461-462,464-466
Order 2-146,351-353,383-409,459-460,463-463
SEG 138-152 ,199-221 ,340-378 ,433-446
Function
Function in SwissProt
Accessory component of both the DNA polymerase delta complex and the DNA polymerase zeta complex (PubMed:22801543, PubMed:17317665, PubMed:24449906). As a component of the trimeric and tetrameric DNA polymerase delta complexes (Pol-delta3 and Pol-delta4, respectively), plays a role in high fidelity genome replication, including in lagging strand synthesis, and repair. Required for optimal Pol-delta activity. Stabilizes the Pol-delta complex and plays a major role in Pol-delta stimulation by PCNA (PubMed:10219083, PubMed:10852724, PubMed:11595739, PubMed:16510448, PubMed:24035200). Pol-delta3 and Pol-delta4 are characterized by the absence or the presence of POLD4. They exhibit differences in catalytic activity. Most notably, Pol-delta3 shows higher proofreading activity than Pol-delta4 (PubMed:19074196, PubMed:20334433). Although both Pol-delta3 and Pol-delta4 process Okazaki fragments in vitro, Pol-delta3 may also be better suited to fulfill this task, exhibiting near-absence of strand displacement activity compared to Pol-delta4 and stalling on encounter with the 5'-blocking oligonucleotides. Pol-delta3 idling process may avoid the formation of a gap, while maintaining a nick that can be readily ligated (PubMed:24035200). Along with DNA polymerase kappa, DNA polymerase delta carries out approximately half of nucleotide excision repair (NER) synthesis following UV irradiation. In this context, POLD3, along with PCNA and RFC1-replication factor C complex, is required to recruit POLD1, the catalytic subunit of the polymerase delta complex, to DNA damage sites (PubMed:20227374). Under conditions of DNA replication stress, required for the repair of broken replication forks through break-induced replication (BIR) (PubMed:24310611). Involved in the translesion synthesis (TLS) of templates carrying O6-methylguanine or abasic sites performed by Pol-delta4, independently of DNA polymerase zeta (REV3L) or eta (POLH). Facilitates abasic site bypass by DNA polymerase delta by promoting extension from the nucleotide inserted opposite the lesion (PubMed:19074196, PubMed:25628356, PubMed:27185888). Also involved in TLS, as a component of the tetrametric DNA polymerase zeta complex. Along with POLD2, dramatically increases the efficiency and processivity of DNA synthesis of the DNA polymerase zeta complex compared to the minimal zeta complex, consisting of only REV3L and REV7 (PubMed:24449906).
Biological Process
Diagram with PDB data
POLD3/PCNACrystal structure of hPCNA bound to residues 452-466 of the DNA polymerase-delta-p66 subunit
See also
Diagram with PDB data
XPA/ERCC1Solution structure of a ERCC1-XPA heterodimer