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IID00164
UniprotQ01831
ProteinDNA repair protein complementing XP-C cells
GeneXPC
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
940
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 109-156 Hetero dimer : IID00549Complex
 Evidence NMR 2rvb A Reference
       Region 2rvb A 109-123 disorder
       Region 2rvb A 109-125 high_rmsd
       Region 2rvb A 124-141 order
       Region 2rvb A 142-156 disorder
       Region 2rvb A 143-156 high_rmsd
Seqdisorder 109-156
 Evidence NMR Reference
       Region 109-156 disorder
Seq 847-863 Hetero dimer : IID00551Complex
 Evidence X-RAY 2ggm D Reference
       Region 2ggm D 847-863 order
 Evidence X-RAY 2ggm C Reference
       Region 2ggm C 847-863 order
Seq 847-863 Hetero dimer : IID00551Complex
 Evidence NMR 2a4j B Reference
       Region 2a4j B 847-863 order
       Region 2a4j B 861-863 high_rmsd
Seqdisorder 847-863
 Evidence CD Reference
       Region 847-863 disorder
Seq 847-863 Hetero tetramer : IID00551Complex
 Evidence X-RAY 2obh D Reference
       Region 2obh D 847-863 order
 Evidence X-RAY 2obh C Reference
       Region 2obh C 847-862 order
       Region 2obh C 863-863 disorder
SeqProS verified 124-141 Hetero dimer : IID00549Complex
       Region 2rvb A 124-141 order
       Region 109-156 disorder
SeqProS verified 847-863 Hetero dimer : IID00551Complex
       Region 2a4j B 847-863 order
       Region 847-863 disorder
SeqProS verified 847-863 Hetero tetramer : IID00551Complex
       Region 2obh C 847-862 order
       Region 2obh D 847-863 order
       Region 847-863 disorder
SeqProS verified 847-863 Hetero dimer : IID00551Complex
       Region 2ggm C 847-863 order
       Region 2ggm D 847-863 order
       Region 847-863 disorder
Seqphosphorylation
    129-129 Phosphoserine
    140-140 Phosphoserine
    169-169 Phosphothreonine
    397-397 Phosphoserine
    398-398 Phosphoserine
    399-399 Phosphoserine
    453-453 Phosphoserine
    460-460 Phosphoserine
    876-876 Phosphothreonine
    883-883 Phosphoserine
    884-884 Phosphoserine
    891-891 Phosphoserine
    903-903 Phosphoserine
    94-94 Phosphoserine
 
Prediction
NeProc
Disorder 1-12,41-186,329-521,711-726,865-940
Order 13-40,187-328,522-710,727-864
ProS 59-62,97-102,116-121,133-139,158-170,183-186,329-369,381-406,420-430,443-447,475-478,515-521,711-717,865-868,875-882,900-910,928-940
AlphaFold
Disorder 1-165,274-276,326-525,725-725,866-894,900-922,935-935,940-940
Order 166-273,277-325,526-724,726-865,895-899,923-934,936-939
Pfam Hmmer
PF03835 488-866 1.1e-268
SEG 20-50 ,71-81 ,119-141 ,303-319 ,380-399 ,432-446 ,448-465 ,501-507 ,833-843 ,911-931
Function
Function in SwissProt
Involved in global genome nucleotide excision repair (GG-NER) by acting as damage sensing and DNA-binding factor component of the XPC complex (PubMed:10734143, PubMed:19609301, PubMed:20649465, PubMed:9734359, PubMed:10873465, PubMed:12509299, PubMed:12547395, PubMed:19941824, PubMed:20028083, PubMed:20798892). Has only a low DNA repair activity by itself which is stimulated by RAD23B and RAD23A. Has a preference to bind DNA containing a short single-stranded segment but not to damaged oligonucleotides (PubMed:10734143, PubMed:19609301, PubMed:20649465). This feature is proposed to be related to a dynamic sensor function: XPC can rapidly screen duplex DNA for non-hydrogen-bonded bases by forming a transient nucleoprotein intermediate complex which matures into a stable recognition complex through an intrinsic single-stranded DNA-binding activity (PubMed:10734143, PubMed:19609301, PubMed:20649465). The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex (PubMed:9734359, PubMed:10873465, PubMed:12509299, PubMed:12547395, PubMed:19941824, PubMed:20028083, PubMed:20798892). The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs (PubMed:9734359, PubMed:10873465, PubMed:12509299, PubMed:12547395, PubMed:19941824, PubMed:20028083, PubMed:20798892). The orientation of XPC complex binding appears to be crucial for inducing a productive NER (PubMed:9734359, PubMed:10873465, PubMed:12509299, PubMed:12547395, PubMed:19941824, PubMed:20028083, PubMed:20798892). XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery (PubMed:9734359, PubMed:10873465, PubMed:12509299, PubMed:12547395, PubMed:19941824, PubMed:20028083, PubMed:20798892). Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair (PubMed:9734359, PubMed:10873465, PubMed:12509299, PubMed:12547395, PubMed:19941824, PubMed:20028083, PubMed:20798892). In vitro, the XPC:RAD23B dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts (PubMed:20028083). XPC:RAD23B contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B stimulates the activity of DNA glycosylases TDG and SMUG1 (PubMed:20028083).
In absence of DNA repair, the XPC complex also acts as a transcription coactivator: XPC interacts with the DNA-binding transcription factor E2F1 at a subset of promoters to recruit KAT2A and histone acetyltransferase complexes (HAT) (PubMed:29973595, PubMed:31527837). KAT2A recruitment specifically promotes acetylation of histone variant H2A.Z.1/H2A.Z, but not H2A.Z.2/H2A.V, thereby promoting expression of target genes (PubMed:31527837).
Biological Process
Diagram with PDB data
XPC/CETN2Solution structure of the C-terminal domain (T94-Y172) of the human centrin 2 in complex with a 17 residues peptide (P1-XPC) from xeroderma pigmentosum group C protein
XPC/GTF2H1Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
See also
Diagram with PDB data
XPA/ERCC1Solution structure of a ERCC1-XPA heterodimer